Fastq and Bam Processing

NVIDIA Parabricks tools that can process fastq files and refine bam files


Here are the articles in this section:

fq2bam
Generate BAM output given one or more pairs of fastq files. Optionally generate BQSR report.

bqsr
bqsr performs the Base Quality Score Recalibration (BQSR) in a stand alone fashion.

applybqsr
applybqsr updates the Base Quality Scores using the BQSR report.