Fastq and Bam Processing

NVIDIA Parabricks tools that can process fastq files and refine bam files

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Generate BAM output given one or more pairs of fastq files. Optionally generate BQSR report.

bqsr performs the Base Quality Score Recalibration (BQSR) in a stand alone fashion.

applybqsr updates the Base Quality Scores using the BQSR report.