NVIDIA Clara Parabricks Pipelines:GVCF Processing: indexgvcf

This tool creates an index for vcf/g.vcf/g.vcf.gz files


Quick Start

$ pbrun indexgvcf --input input.g.vcf


Compatible CPU GATK4 Command

$ gatk IndexFeatureFile -F input.g.vcf


Options

Option

Description

--input (required)

Path to the vcf/g.vcf/g.vcf.gz file to be indexed.