selectvariants

Select variants from a database and create a gvcf.


Quick Start

CLI

$ pbrun selectvariants --ref Ref.fa \
--db-dir database_dir \
--out-gvcf-dir gvcf_dir


Options

Option

Description

--ref (required)

Path to the reference file.

--db-dir (required)

Path to the directory which is the genomic database.

--out-gvcf-dir (required)

Path to output directory which will have all the gvcf with selected variants.

--num-threads

Defaults to 4.
Number of threads for worker.