NVIDIA Clara Parabricks Pipelines: Pipelines Overview

The following standalone pipelines can be used with the NVIDIA Clara Parabricks Pipelines software. Please click on the tool names for tool specific options.


Pipeline

Functionality

Detect germline variants for a given sample from fastq files. Compatible with GATK4 best practices.

Detect germline variants for a given sample from fastq files with correct ploidy values for human sex chromosome handling. Compatible with GATK4 best practices.

Detect somatic variants for a given tumor/normal fastq files. Compatible with GATK4 best practices.

Use GenomicsDB to run accelerated Joint Variant Calling.