Pipelines Overview

The following standalone pipelines can be used with the NVIDIA Parabricks software. Please click on the tool names for tool specific options.


Pipeline

Functionality

Detect germline variants for a given sample from fastq files. Compatible with GATK4 best practices.

Detect germline variants for a given sample from fastq files with correct ploidy values for human sex chromosome handling. Compatible with GATK4 best practices.

Detect somatic variants for a given tumor/normal fastq files. Compatible with GATK4 best practices.

Use GenomicsDB to run accelerated Joint Variant Calling.