STAR-FUSION
Identifying candidate fusion transcripts
Quick Start
CLI
$ pbrun starfusion --chimeric-junction sample_x.out.junction --genome-lib-dir HG38 --output-dir sample_X/
Compatible CPU Command
The command below is the CPU counterpart of the Parabricks command above. The output from these commands will generate the exact same results as the output from the above command.
$ ./STAR-Fusion --chimeric_junction sample_x.out.junction --genome_lib_dir HG38 --output_dir sample_X/
Options
Path to the Chimeric.out.junction file produced by STAR (default: None)
Path to a genome resource library directory. For more information, visit https://github.com/STAR-Fusion/STAR-Fusion/wiki/installing-star-fusion#data_resources_required
Path to the directory that will contain all of the generated files (default: None)
Number of threads for worker (default: 4)