STAR-FUSION

Identifying candidate fusion transcripts

Quick Start

CLI

$ pbrun starfusion --chimeric-junction sample_x.out.junction --genome-lib-dir HG38 --output-dir sample_X/

Compatible CPU Command

The command below is the CPU counterpart of the Parabricks command above. The output from these commands will generate the exact same results as the output from the above command.

$ ./STAR-Fusion --chimeric_junction sample_x.out.junction --genome_lib_dir HG38 --output_dir sample_X/

Options

Option

Description

--chimeric-junction

Path to the Chimeric.out.junction file produced by STAR (default: None)

--genome-lib-dir

Path to a genome resource library directory. For more information, visit https://github.com/STAR-Fusion/STAR-Fusion/wiki/installing-star-fusion#data_resources_required

--output-dir

Path to the directory that will contain all of the generated files (default: None)

--num-threads

Number of threads for worker (default: 4)