Streaming Data from Google Cloud Storage

You can stream data directly from Google Cloud Storage (GCS) and use it as input for Parabricks Software. Currently fastq.gz and bam format file objects on GCS can be provided directly to Parabricks software as input:

#Run Parabricks with the Handles
$ pbrun deepvariant --ref Ref/Homo_sapiens_assembly38.fasta \
--in-bam gs://mybucket/NA12878.bam --out-variants NA_dv_g.vcf.gz